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Re: Filtern mittels regex Syntax

Verfasst: Mi Apr 17, 2019 4:35 pm
von wbart
Danke schön,

ich habe auch eine praktikable Lösung gefunden. Wie du bereits erwähnt hast kann man ja die Regexp Terme mit einem oder verknüpfen. Das funktioniert ganz gut für mich.

Code: Alles auswählen

collagen <- c("\\bCOL1A1\\b|\\bCOL1A2\\b|\\bCOL2A1\\b|\\bCOL3A1\\b|\\bCOL4A1\\b|\\bCOL4A2\\b|\\bCOL4A3\\b|\\bCOL4A4\\b|\\bCOL4A5\\b|\\bCOL4A6\\b|\\bCOL5A1\\b|\\bCOL5A2\\b|\\bCOL5A3\\b|\\bCOL6A1\\b|\\bCOL6A2\\b|\\bCOL6A3\\b|\\bCOL6A4P1\\b|\\bCOL6A4P2\\b|\\bCOL6A5\\b|\\bCOL6A6\\b|\\bCOL7A1\\b|\\bCOL8A1\\b|\\bCOL8A2\\b|\\bCOL9A1\\b|\\bCOL9A2\\b|\\bCOL9A3\\b|\\bCOL10A1\\b|\\bCOL11A1\\b|\\bCOL11A2\\b|\\bCOL12A1\\b|\\bCOL13A1\\b|\\bCOL14A1\\b|\\bCOL15A1\\b|\\bCOL16A1\\b|\\bCOL17A1\\b|\\bCOL18A1\\b|\\bCOL19A1\\b|\\bCOL20A1\\b|\\bCOL21A1\\b|\\bCOL22A1\\b|\\bCOL23A1\\b|\\bCOL24A1\\b|\\bCOL25A1\\b|\\bCOL26A1\\b|\\bCOL27A1\\b|\\bCOL28A1|\\bOI4\\b|\\bOI4\\b|\\bSEDC\\b|\\b AOM\\b|\\b STL1\\b|\\bEDS4A\\b|\\bFLJ22259\\b|\\b DKFZp686I14213\\b|\\bCA44\\b|\\bASLN\\b|\\b ATS\\b|\\bDVWA\\b|\\b VWA6\\b|\\b DIVA\\b|\\b COL6A4\\b|\\b COL6A4P\\b|\\bCOL6A4\\b|\\bCOL29A1\\b|\\b FLJ35880\\b|\\b VWA4\\b|\\bEBDCT\\b|\\b EBD1\\b|\\b EBR1\\b|\\bC3orf7\\b|\\b MGC9568\\b|\\bFECD\\b|\\b PPCD\\b|\\b FECD1\\b|\\b PPCD2\\b|\\bEDM2\\b|\\b MED\\b|\\bIDD\\b|\\b MED\\b|\\b EDM3\\b|\\b FLJ90759\\b|\\b DJ885L7.4.1\\b|\\bCOLL6\\b|\\b STL2\\b|\\b CO11A1\\b|\\bDFNA13\\b|\\b DFNB53\\b|\\b HKE5\\b|\\bCOL12A1L\\b|\\bUND\\b|\\bBPAG2\\b|\\b BP180\\b|\\bKNO\\b|\\b KS\\b|\\b KNO1\\b|\\bKIAA1510\\b|\\bDKFZp434K0621\\b|\\bEMID2\\b|\\b Emu2\\b|\\b EMI6\\b|\\bKIAA1870\\b|\\b MGC11337\\b|\\b FLJ11895\\b") # Alle Collagene inklusive Aliase aus gennames.org

Barriere62 <- Daten[grepl(collagen, Daten$`Primary Sequence Name`),]   # Genselection z.B.- Barriere etc
Gruß
Werner

Re: Filtern mittels regex Syntax

Verfasst: Mi Apr 17, 2019 8:04 pm
von jogo
auch schön.

Gruß, Jörg